Colourful red and green macroalgae growing in a reef aquarium

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Algae IDs

Identify common reef growth, choose useful macroalgae and understand what to do when a patch becomes a problem.

Friend: useful when managed. Caution: context or identification matters. Pest: troublesome in a coral display. Photos are reference examples, not species diagnoses.

Start with identification and physical removal. Grazing varies; choose animals for the tank’s long-term needs. Keep nutrients balanced rather than chasing zero, and follow the current product label before treatment.

Written by Christian, Signature FragsLast reviewed:

Microalgae

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Ostreopsis cf. ovata under a microscope; other dinoflagellate groups look different.

Ostreopsis cf. ovata under a microscope; other dinoflagellate groups look different.

Nuisance dinoflagellates

Pest

Benthic dinoflagellates; several different genera

Confirm the group under a microscope before choosing treatment.

Pest algae · Microalgae · Slime & lookalikes

Quick ID
Brown mucus, strings or bubbles may occur; these signs are not diagnostic.
Benefits / uses
Many dinoflagellates are beneficial; this card concerns nuisance surface blooms.
Problems / risks
Some nuisance groups produce toxins and harm grazers or coral.
Will anything eat it?
Do not rely on fish or snails; some groups are hazardous to grazers.
Products / equipment
Fauna Marin Dino X is an option after ID. Its manual warns about macroalgae, echinoderms, sea hares, clams and sponges.
Common lookalikes
Cyano, diatoms and golden algae; similar brown coatings need different approaches.
Care / control
Obtain a microscope ID, siphon growth and avoid driving nitrate/phosphate to zero. UV helps some water-column groups.
Research sources

Identification / care reference · Further care / manufacturer guidance

Small-cell Amphidinium close-up reference Close-up / microscope
Small-cell Amphidinium reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Small-cell Amphidinium

Pest

Amphidinium spp. — small-cell hobby grouping

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Tiny golden-brown oval cells, often moving rapidly; use a calibrated scale and video, not magnification alone. In the tank: a persistent brown film on sand, glass or rock.
Benefits / uses
Part of microbial communities; a dense display bloom offers no practical benefit.
Problems / risks
Can irritate coral and recur after cleaning. Small-cell is a hobby grouping, not a confirmed species name.
Will anything eat it?
Grazing is variable; extra snails are not a dependable cure and may be exposed to harmful cells.
Products / equipment
A correctly sized enclosed UV steriliser is an option for swimming cells. Nutrient supplements only when testing shows a shortfall; follow labels.
Common lookalikes
Large-cell Amphidinium, other small flagellates and diatoms. Film colour alone cannot distinguish them.
Care / control
Confirm the ID, siphon deposits and maintain stable, measurable nitrate and phosphate. Check a night sample: UV can help when cells enter the water.
Research sources

Taxonomy and identification · Aquarium care guide · Microscope reference · Tank reference

Large-cell Amphidinium close-up reference Close-up / microscope
Large-cell Amphidinium reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Large-cell Amphidinium

Pest

Amphidinium spp. — large-cell hobby grouping

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Larger, flattened oval cells with a small off-centre cap or beak; often glide over the slide. In the tank: rust-brown sand patches, sometimes with little mucus or bubbling.
Benefits / uses
Normal low-level microbial diversity; an extensive sandbed bloom is undesirable.
Problems / risks
Often persists within the sand. Some outbreaks appear less toxic, but this does not establish that a strain is harmless.
Will anything eat it?
Some micrograzers may consume cells; do not buy sand-sifting livestock as a guaranteed treatment.
Products / equipment
Silicate dosing to encourage competing diatoms is an optional, monitored advanced approach after confirmed ID—not a universal cure. Avoid blind dosing.
Common lookalikes
Diatoms, small-cell Amphidinium and mixed films; appearance and apparent cell size need context.
Care / control
Confirm under a microscope, remove surface deposits gently and correct nutrient depletion. UV often has limited reach because much of the population stays in the sand.
Research sources

Taxonomy and identification · Aquarium care guide · Microscope reference · Tank reference

Large-cell Amphidinium: aquarist observations and experimental approaches

Ostreopsis close-up reference Close-up / microscope
Ostreopsis reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Ostreopsis

Pest

Ostreopsis spp.

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Flattened oval or teardrop cells, often pivoting around an attachment point. In the tank: brown mucus and long bubble-bearing strings on rock, glass, sand or coral.
Benefits / uses
A natural benthic organism; dense nuisance blooms are best controlled.
Problems / risks
Some species produce potent toxins and can harm grazers. Avoid splashing or aerosolising suspect growth; do not scrub or pressure-wash affected rock into the air.
Will anything eat it?
Do not add snails or herbivorous fish as a remedy for a potentially toxic bloom.
Products / equipment
UV and activated carbon are supportive tools. Chemical treatment requires checking the current label and livestock compatibility; no guaranteed one-bottle cure.
Common lookalikes
Coolia, Prorocentrum, chrysophytes and cyano; bubbles and strings alone are not a diagnosis.
Care / control
Microscope confirmation first. Siphon gently, maintain aeration and balanced nutrients. Enclosed UV can help when cells detach into the water; use activated carbon according to its label.
Research sources

Taxonomy and identification · Aquarium care guide · Microscope reference · Tank reference

Coolia close-up reference Close-up / microscope
Coolia reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Coolia

Pest

Coolia spp.

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Rounded, lens-like cells with visible grooves; the view changes as the cell rotates. In the tank: brown films or patches on sand and rock, sometimes mixed with other growth.
Benefits / uses
A natural reef microbe; a dense nuisance bloom has no display benefit.
Problems / risks
Toxicity varies by species and strain. A round cell does not establish the species or its toxicity.
Will anything eat it?
No dependable clean-up crew solution; avoid exposing new grazers to an unidentified bloom.
Products / equipment
Enclosed UV is useful only for cells passing through it; carbon may support toxin management. Avoid stacking chemical treatments.
Common lookalikes
Ostreopsis and Gambierdiscus; specialist morphology or molecular work may be needed for an exact species ID.
Care / control
Record a microscope video and seek confirmation. Siphon patches and stabilise nutrients. Check whether cells leave surfaces at night before relying on UV.
Research sources

Taxonomy and identification · Aquarium care guide · Microscope reference · Tank reference

Golden algae / chrysophytes close-up reference Close-up / microscope
Golden algae / chrysophytes reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Golden algae / chrysophytes

Pest

Chrysophyte-type golden films — microscope confirmation required

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Yellow-gold to brown, wispy or gelatinous coatings on rock and sand. Small golden cells may sit within mucus; this appearance is shared by several unrelated organisms.
Benefits / uses
Golden algae are part of aquatic food webs; dense coatings are undesirable around coral.
Problems / risks
Thick growth can cover coral and trap debris. “Golden algae” is a broad common name, not a reliable species identification.
Will anything eat it?
Grazing is inconsistent. Confirm that the film is not a potentially toxic dinoflagellate before adding animals.
Products / equipment
Some golden algae form silica structures, but not every reef golden film is driven by silicate. Use silicate-removal media only for a demonstrated issue and monitor phosphate too.
Common lookalikes
Diatoms, dinoflagellates, bacterial films and haptophytes. Chrysophytes are not diatoms; Prymnesium “golden algae” is a different group.
Care / control
Siphon and remove loose coatings, maintain balanced nutrients and inspect RO/DI water and resin. Investigate silicate inputs if measured high; they are not proof of the cause.
Research sources

Smithsonian: golden algae and diatoms · University of Minnesota: silica-scaled forms · Biota: aquarium observations · Microscope comparison

A golden-brown diatom-type coating across aquarium sand, contrasting with clean white patches.

Brown dusting across aquarium sand; the clean white patches make the coating easier to recognise. Similar blooms need confirmation if persistent.

Diatoms / brown dust

Caution

Benthic diatoms; Bacillariophyta

Common in new tanks; a persistent bloom deserves a source check.

Microalgae · New-tank growth

Quick ID
Fine golden-brown dust on sand, rock or glass that wipes or siphons away.
Benefits / uses
Food for small grazers and part of a developing reef food web.
Problems / risks
Heavy coatings spoil appearance and may cover nearby coral surfaces.
Will anything eat it?
Trochus, cerith and nerite snails commonly graze films; fish vary.
Products / equipment
RO/DI maintenance first. RowaPhos removes silicate and phosphate; use only when indicated and monitor phosphate.
Common lookalikes
Cyano sheets and dino mucus; microscopy is useful when brown coatings persist.
Care / control
Siphon or wipe, allow new systems to mature and check source-water quality for persistent blooms.
Research sources

Identification / care reference · Further care / manufacturer guidance · Further care / manufacturer guidance

Nannochloropsis under a microscope; live phytoplankton is individually microscopic.

Nannochloropsis under a microscope; live phytoplankton is individually microscopic.

Live phytoplankton

Friend

Nannochloropsis, Isochrysis, Tetraselmis and other cultured microalgae

Useful live food when the culture and amount suit your animals.

Microalgae · Live food

Quick ID
Individual cells are microscopic; a culture may look green, golden or brown.
Benefits / uses
Feeds copepods and suitable filter feeders; different cell sizes suit different consumers.
Problems / risks
Overfeeding or a failing culture can add unwanted organic material.
Will anything eat it?
Consumed by appropriate plankton feeders and pods; algae-grazing fish are not the main users.
Products / equipment
Live marine blends such as AlgaeBarn OceanMagik are feeds, not guaranteed outbreak cures.
Common lookalikes
An accidental green-water bloom is not evidence of a clean, suitable food culture.
Care / control
Choose clean cultured marine strains, store as directed and start with modest feeding.
Research sources

Identification / care reference · Further care / manufacturer guidance

Close-up of coral tentacles in purple, pink, blue and green

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