Colourful red and green macroalgae growing in a reef aquarium

KNOWLEDGE, CULTIVATED.

Algae IDs

Identify common reef growth, choose useful macroalgae and understand what to do when a patch becomes a problem.

Friend: useful when managed. Caution: context or identification matters. Pest: troublesome in a coral display. Photos are reference examples, not species diagnoses.

Start with identification and physical removal. Grazing varies; choose animals for the tank’s long-term needs. Keep nutrients balanced rather than chasing zero, and follow the current product label before treatment.

Written by Christian, Signature FragsLast reviewed:

Slime & lookalikes

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Burgundy-red slime mats covering live rock beside zoanthids and aquarium sand.

Red slime in a reef tank: the burgundy sheets cover the rock between the zoanthids and sand.

Cyanobacteria / red slime

Pest

Cyanobacteria; photosynthetic bacteria

An algae lookalike; treatment differs from true macroalgae.

Pest algae · Slime & lookalikes · Not a true alga

Quick ID
Slippery red, purple, green or dark sheets; sometimes with trapped bubbles.
Benefits / uses
Natural microbes, but thick aquarium mats are undesirable.
Problems / risks
Mats cover sand and coral surfaces; large die-offs can affect oxygen.
Will anything eat it?
Most fish and common algae snails are unreliable controls.
Products / equipment
Boyd Chemiclean is marketed for cyano-associated stains. Follow the current label and provide strong aeration; Dino X does not treat cyano.
Common lookalikes
Diatoms form dust; dinos can form stringy mucus. Colour and bubbles alone do not confirm an ID.
Care / control
Siphon mats, remove trapped detritus and improve circulation and nutrient balance.
Research sources

Identification / care reference · Further care / manufacturer guidance

Ostreopsis cf. ovata under a microscope; other dinoflagellate groups look different.

Ostreopsis cf. ovata under a microscope; other dinoflagellate groups look different.

Nuisance dinoflagellates

Pest

Benthic dinoflagellates; several different genera

Confirm the group under a microscope before choosing treatment.

Pest algae · Microalgae · Slime & lookalikes

Quick ID
Brown mucus, strings or bubbles may occur; these signs are not diagnostic.
Benefits / uses
Many dinoflagellates are beneficial; this card concerns nuisance surface blooms.
Problems / risks
Some nuisance groups produce toxins and harm grazers or coral.
Will anything eat it?
Do not rely on fish or snails; some groups are hazardous to grazers.
Products / equipment
Fauna Marin Dino X is an option after ID. Its manual warns about macroalgae, echinoderms, sea hares, clams and sponges.
Common lookalikes
Cyano, diatoms and golden algae; similar brown coatings need different approaches.
Care / control
Obtain a microscope ID, siphon growth and avoid driving nitrate/phosphate to zero. UV helps some water-column groups.
Research sources

Identification / care reference · Further care / manufacturer guidance

Small-cell Amphidinium close-up reference Close-up / microscope
Small-cell Amphidinium reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Small-cell Amphidinium

Pest

Amphidinium spp. — small-cell hobby grouping

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Tiny golden-brown oval cells, often moving rapidly; use a calibrated scale and video, not magnification alone. In the tank: a persistent brown film on sand, glass or rock.
Benefits / uses
Part of microbial communities; a dense display bloom offers no practical benefit.
Problems / risks
Can irritate coral and recur after cleaning. Small-cell is a hobby grouping, not a confirmed species name.
Will anything eat it?
Grazing is variable; extra snails are not a dependable cure and may be exposed to harmful cells.
Products / equipment
A correctly sized enclosed UV steriliser is an option for swimming cells. Nutrient supplements only when testing shows a shortfall; follow labels.
Common lookalikes
Large-cell Amphidinium, other small flagellates and diatoms. Film colour alone cannot distinguish them.
Care / control
Confirm the ID, siphon deposits and maintain stable, measurable nitrate and phosphate. Check a night sample: UV can help when cells enter the water.
Research sources

Taxonomy and identification · Aquarium care guide · Microscope reference · Tank reference

Large-cell Amphidinium close-up reference Close-up / microscope
Large-cell Amphidinium reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Large-cell Amphidinium

Pest

Amphidinium spp. — large-cell hobby grouping

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Larger, flattened oval cells with a small off-centre cap or beak; often glide over the slide. In the tank: rust-brown sand patches, sometimes with little mucus or bubbling.
Benefits / uses
Normal low-level microbial diversity; an extensive sandbed bloom is undesirable.
Problems / risks
Often persists within the sand. Some outbreaks appear less toxic, but this does not establish that a strain is harmless.
Will anything eat it?
Some micrograzers may consume cells; do not buy sand-sifting livestock as a guaranteed treatment.
Products / equipment
Silicate dosing to encourage competing diatoms is an optional, monitored advanced approach after confirmed ID—not a universal cure. Avoid blind dosing.
Common lookalikes
Diatoms, small-cell Amphidinium and mixed films; appearance and apparent cell size need context.
Care / control
Confirm under a microscope, remove surface deposits gently and correct nutrient depletion. UV often has limited reach because much of the population stays in the sand.
Research sources

Taxonomy and identification · Aquarium care guide · Microscope reference · Tank reference

Large-cell Amphidinium: aquarist observations and experimental approaches

Ostreopsis close-up reference Close-up / microscope
Ostreopsis reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Ostreopsis

Pest

Ostreopsis spp.

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Flattened oval or teardrop cells, often pivoting around an attachment point. In the tank: brown mucus and long bubble-bearing strings on rock, glass, sand or coral.
Benefits / uses
A natural benthic organism; dense nuisance blooms are best controlled.
Problems / risks
Some species produce potent toxins and can harm grazers. Avoid splashing or aerosolising suspect growth; do not scrub or pressure-wash affected rock into the air.
Will anything eat it?
Do not add snails or herbivorous fish as a remedy for a potentially toxic bloom.
Products / equipment
UV and activated carbon are supportive tools. Chemical treatment requires checking the current label and livestock compatibility; no guaranteed one-bottle cure.
Common lookalikes
Coolia, Prorocentrum, chrysophytes and cyano; bubbles and strings alone are not a diagnosis.
Care / control
Microscope confirmation first. Siphon gently, maintain aeration and balanced nutrients. Enclosed UV can help when cells detach into the water; use activated carbon according to its label.
Research sources

Taxonomy and identification · Aquarium care guide · Microscope reference · Tank reference

Coolia close-up reference Close-up / microscope
Coolia reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Coolia

Pest

Coolia spp.

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Rounded, lens-like cells with visible grooves; the view changes as the cell rotates. In the tank: brown films or patches on sand and rock, sometimes mixed with other growth.
Benefits / uses
A natural reef microbe; a dense nuisance bloom has no display benefit.
Problems / risks
Toxicity varies by species and strain. A round cell does not establish the species or its toxicity.
Will anything eat it?
No dependable clean-up crew solution; avoid exposing new grazers to an unidentified bloom.
Products / equipment
Enclosed UV is useful only for cells passing through it; carbon may support toxin management. Avoid stacking chemical treatments.
Common lookalikes
Ostreopsis and Gambierdiscus; specialist morphology or molecular work may be needed for an exact species ID.
Care / control
Record a microscope video and seek confirmation. Siphon patches and stabilise nutrients. Check whether cells leave surfaces at night before relying on UV.
Research sources

Taxonomy and identification · Aquarium care guide · Microscope reference · Tank reference

Golden algae / chrysophytes close-up reference Close-up / microscope
Golden algae / chrysophytes reef-tank appearance reference In a reef tank

Top: microscope reference. Bottom: reef-tank appearance; colour alone cannot confirm the ID.

Golden algae / chrysophytes

Pest

Chrysophyte-type golden films — microscope confirmation required

Identify the cells before choosing treatment.

Pest algae · Microscopic ID · Reef-tank appearance

Quick ID
Yellow-gold to brown, wispy or gelatinous coatings on rock and sand. Small golden cells may sit within mucus; this appearance is shared by several unrelated organisms.
Benefits / uses
Golden algae are part of aquatic food webs; dense coatings are undesirable around coral.
Problems / risks
Thick growth can cover coral and trap debris. “Golden algae” is a broad common name, not a reliable species identification.
Will anything eat it?
Grazing is inconsistent. Confirm that the film is not a potentially toxic dinoflagellate before adding animals.
Products / equipment
Some golden algae form silica structures, but not every reef golden film is driven by silicate. Use silicate-removal media only for a demonstrated issue and monitor phosphate too.
Common lookalikes
Diatoms, dinoflagellates, bacterial films and haptophytes. Chrysophytes are not diatoms; Prymnesium “golden algae” is a different group.
Care / control
Siphon and remove loose coatings, maintain balanced nutrients and inspect RO/DI water and resin. Investigate silicate inputs if measured high; they are not proof of the cause.
Research sources

Smithsonian: golden algae and diatoms · University of Minnesota: silica-scaled forms · Biota: aquarium observations · Microscope comparison

Microscope view of freshwater Oedogonium filaments.

Microscope view of freshwater Oedogonium filaments.

Oedogonium — freshwater lookalike

Caution

Oedogonium spp.

Primarily freshwater; do not use this name for ordinary marine hair algae.

Freshwater · Slime & lookalikes

Quick ID
Unbranched green filaments; microscope-visible cap rings are an important identifying feature.
Benefits / uses
A freshwater primary producer, rather than a usual marine refugium crop.
Problems / risks
Can become nuisance filamentous growth in freshwater planted systems.
Will anything eat it?
Freshwater grazing advice cannot be transferred directly to a reef aquarium.
Products / equipment
Do not select a marine algicide from a freshwater algae name; confirm the organism and system first.
Common lookalikes
Other unbranched green filaments, especially marine hair algae identified only from a photo.
Care / control
In a marine tank, recheck the ID. In freshwater, remove growth and review planted-tank conditions.
Research sources

Identification / care reference

Close-up of coral tentacles in purple, pink, blue and green

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